Consensus prediction of membrane protein topology |
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For large benchmark sets and full proteome scans, use the SCAMPI server or the TOPCONS-single server instead.
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Enter one amino acid sequence in FASTA format
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TOPCONS: TOPCONS: consensus prediction of membrane protein topology. Andreas Bernsel, Håkan Viklund, Aron Hennerdal and Arne Elofsson (2009) Nucleic Acids Research 37(Webserver issue), W465-8 [PubMed]
SCAMPI: Prediction of membrane-protein topology from first principles. Andreas Bernsel, Håkan Viklund, Jenny Falk, Erik Lindahl, Gunnar von Heijne and Arne Elofsson (2008) Proc. Natl. Acad. Sci. USA. 105, 7177-7181. [Pubmed]
OCTOPUS: A method that improves topology prediction for transmembrane proteins by using two-track ANN-based preference scores and an improved topological grammar. Håkan Viklund and Arne Elofsson (2008) Bioinformatics. 24, 1662-1668. [Pubmed]
ΔG-scale: Molecular code for transmembrane-helix recognition by the Sec61 translocon. Tara Hessa, Nadja Meindl-Beinker, Andreas Bernsel, Joy Kim, Yoko Sato, Mirjam Lerch, Carolina Lundin, IngMarie Nilsson, Stephen H. White, and Gunnar von Heijne (2007) Nature 450, 1026-1030. [PubMed]
ZPRED: ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins. Erik Granseth, Håkan Viklund and Arne Elofsson (2006) Bioinformatics 22, e191-e196 [PubMed]
PRO/PRODIV-TMHMM: Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information. Håkan Viklund and Arne Elofsson (2004) Protein Science 13, 1908-1917 [PubMed]
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